Organic Chemistry Organohalides

Substitution and Elimination Reactions in Living Organisms

Topic overview

Start with the big picture

Biological organohalide chemistry is shaped by enzymes that favor nucleophilic substitution or elimination and reductive dehalogenation; free-solution S_N1/E1 pathways are uncommon in the cellular environment. Haloalkane dehalogenases, glutathione S-transferases, and L-2-haloacid dehalogenases illustrate distinct forms of substitution. Reductive dehalogenases cleave carbon–halogen bonds through electron transfer, while halogenating enzymes install halogens during biosynthesis or through peroxidase systems. Thyroid deiodinases provide a specialized example of reductive dehalogenation with a role in hormone regulation. The lesson also considers how substrate positioning, transition-state stabilization, and leaving-group ability influence biological reactivity.

Learning objectives

What you'll learn

  • Distinguish common enzyme-mediated organohalide reactions from rare S_N1/E1 pathways.
  • Describe the catalytic sequence of haloalkane dehalogenases.
  • Compare organohalide substitution by GSTs and L-2-haloacid dehalogenases.
  • Explain the roles of reductive dehalogenation and enzymatic halogenation.
  • Relate thyroid deiodinase activity and leaving-group ability to biological function.
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